Tomasz
Lipniacki, Ph.D
Department
of Mechanics and Physics of Fluids
Institute of Fundamental Technological Research
Warsaw,
Poland.
Email: tlipnia@ippt.gov.pl or tomek@rice.edu
CURRENT
RESEARCH
Stochastic modeling of immune response and gene
expression.
Left: Two feedback loop stochastic model,
and Right NF-κB and IκB co-oscillations of single cells (red
lines) and of population average (blue line), full story: Biophys. J. 2006 and pdf presentation
Protein-Protein
probability distribution functions in repressor-repressor system, full story: Superfluid
vortex configuration during formation of plane Cuette flow, full story: PUBLICATIONS T.
Lipniacki, M. Kimmel, Deterministic and stochastic models of NF-κB
pathway, Cardiovascular Toxicology – in press, text (pdf),
figures (pdf). Bobrowski,
T. Lipniacki, K. Pichór, R. Rudnicki, Asymptotic behavior of distributions of
mRNA and protein levels in a model of stochastic gene expression, Journal of
Mathematical Analysis and Applications – in press, pdf. B. Hat, P.
Paszek, M. Kimmel, K. Piechór, T. Lipniacki, How the number of alleles
influences gene expression, J. Stat. Phys. – in press, pdf. K.
Fujarewicz, M. Kimmel, T. Lipniacki A. Świerniak, Adjoint systems for
models of cell T.
Lipniacki, Dynamics of superfluid He: Two-scale approach, European Journal
of Mechanics, B/Fluids, 25: 435-458 (2006), pdf. T.
Lipniacki, P. Paszek, A. R. Brasier, B. Luxon, M. Kimmel, Stochasticity in
early immune response, Biophysical Journal 90: 725-742 (2006), pdf T.
Lipniacki, P. Paszek, A. Marciniak-Czochra, A. R. Brasier, M. Kimmel,
Transcriptional stochasticity in gene expression, J. Theor. Biol. 238: 348-367 (2006), pdf. P. Paszek,
T. Lipniacki, A. R. Brasier, B. Tian, D. E. Nowak, M. Kimmel, Stochastic
effects of multiple regulators on expression profiles in eukaryotes, J.
Theor. Biol. 233: 423-433
(2005), pdf. T.
Lipniacki, P. Paszek, A. R. Brasier, B. Luxon, M. Kimmel, Mathematical model of
NF-κB regulatory module, J. Theor. Biol. 228: 195-215,
(2004), pdf. T.
Lipniacki, Shape-preserving solutions for quantum vortex motion under localized
induction approximation, Physics of Fluids 15 (6): 1381-1395,
(2003), pdf. T.
Lipniacki, Quasi-static solution for quantum vortex motion under the localized
induction approximation, J. Fluid Mech. 477: 321-337, (2002), pdf. B.
Kaźmierczak, T. Lipniacki, Homoclinic solutions in mechanical systems with
small dissipation. Application to DNA dynamics, J. Math. Biol. 44: 309-329 (2002), pdf. T.
Lipniacki, Evolution of line-length density and anisotropy of quantum tangle, Phys.
Rev B 64: 214516-1-9 (2001), pdf T.
Lipniacki, Thermodynamics of local DNA openings, Phys. Rev. E 64: 051919-1-5 (2001), pdf. T.
Lipniacki, On quantum turbulence in superfluid Helium, Arch. Mech. 53
(1): 23-43 (2001). T.
Lipniacki, Torsional travelling waves in DNA, J. Non-linear Math. Phys. 8:
188-194 (2001). T.
Lipniacki, Statics of rigid units chain, International Journal of
Bifurcation and Chaos 11, (3): 845-854 (2001), pdf T.
Lipniacki, Evolution of quantum vortices following reconnection, European
Journal of T.
Lipniacki, Chemically driven traveling waves in DNA, Phys. Rev. E, 60: 7253-7561 (1999), pdf. T.
Lipniacki, Non linear mechanical model of DNA dynamics, Nuovo Cimento D 20
(6): 831-843 (1998), pdf. T.
Lipniacki, Dynamics of quantum vortices in superfluid T.
Lipniacki, Dynamics of superfluid Helium - Limits of the Vinen model, Arch.
Mech. 49 (4): 615-633 (1997). T.
Lipniacki, Can the system of discrete vortices imitate boundary layer, Arch.
Mech. 49 (1): 103-109 (1997).
Anisotropic Superfluid Turbulence
signalling pathways and their application to parameter fitting, IEEE/ACM
Transactions on
Computational Biology and Bioinformatics – in press, doc.
Mechanics, B/Fluids 19: 361-378 (2000), pdf
He, Arch.
Mech. 50 (3): 439-454 (1998).